TXPipe
latest
Getting started:
TXPipe Installation
Running an example pipeline
How TXPipe Works
Using & Contributing:
Configuration Files
Adding new pipeline stages
TXPipe Parallelization
Running TXPipe at NERSC
Stages requiring the LSST environment
Reference:
Reading HDF5 Files
TXPipe Stage Listing
Data Type Classes
Library Utilities
TXPipe
Index
Edit on GitHub
Index
A
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B
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C
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D
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E
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F
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G
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H
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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Y
A
accumulate_maps() (txpipe.auxiliary_maps.TXAuxiliaryLensMaps method)
(txpipe.auxiliary_maps.TXAuxiliarySourceMaps method)
(txpipe.maps.TXBaseMaps method)
(txpipe.maps.TXLensMaps method)
(txpipe.maps.TXSourceMaps method)
(txpipe.noise_maps.TXLensNoiseMaps method)
(txpipe.noise_maps.TXSourceNoiseMaps method)
add_data() (txpipe.utils.calibration_tools.HSCCalculator method)
(txpipe.utils.calibration_tools.LensfitCalculator method)
(txpipe.utils.calibration_tools.MetacalCalculator method)
(txpipe.utils.number_density_stats.LensNumberDensityStats method)
(txpipe.utils.number_density_stats.SourceNumberDensityStats method)
add_provenance() (txpipe.data_types.base.DataFile method)
apply() (txpipe.utils.calibrators.HSCCalibrator method)
(txpipe.utils.calibrators.LensfitCalibrator method)
(txpipe.utils.calibrators.MetaCalibrator method)
(txpipe.utils.calibrators.NullCalibrator method)
apply_galaxy_bias_ggl() (in module txpipe.plotting.correlations)
axis_setup() (in module txpipe.plotting.correlations)
B
BatchWriter (class in txpipe.utils.hdf_tools)
C
calculate_tomography() (txpipe.source_selector.TXSourceSelectorBase method)
Calibrator (class in txpipe.utils.calibrators)
call_treecorr() (txpipe.extensions.twopoint_scia.TXSelfCalibrationIA method)
(txpipe.twopoint.TXTwoPoint method)
catalog_type (txpipe.data_types.types.ShearCatalog property)
choose_pixel_scheme() (txpipe.auxiliary_maps.TXAuxiliaryLensMaps method)
(txpipe.auxiliary_maps.TXAuxiliarySourceMaps method)
(txpipe.maps.TXBaseMaps method)
(txpipe.noise_maps.TXLensNoiseMaps method)
(txpipe.noise_maps.TXSourceNoiseMaps method)
choose_pixelization() (in module txpipe.utils.pixel_schemes)
,
[1]
close() (txpipe.data_types.base.DataFile method)
(txpipe.data_types.base.FitsFile method)
(txpipe.data_types.base.HDFFile method)
(txpipe.data_types.base.ParquetFile method)
(txpipe.data_types.base.PNGFile method)
(txpipe.data_types.types.SACCFile method)
ClusteringNoiseMaps (class in txpipe.data_types.types)
collect() (txpipe.utils.calibration_tools.HSCCalculator method)
(txpipe.utils.calibration_tools.LensfitCalculator method)
(txpipe.utils.calibration_tools.MetacalCalculator method)
(txpipe.utils.number_density_stats.LensNumberDensityStats method)
(txpipe.utils.number_density_stats.SourceNumberDensityStats method)
compute_output_stats() (txpipe.source_selector.TXSourceSelectorMetacal method)
create_dataset_early_allocated() (in module txpipe.utils.hdf_tools)
CSVFile (class in txpipe.data_types.types)
D
data_iterator() (txpipe.auxiliary_maps.TXAuxiliaryLensMaps method)
(txpipe.auxiliary_maps.TXAuxiliarySourceMaps method)
(txpipe.maps.TXBaseMaps method)
(txpipe.maps.TXExternalLensMaps method)
(txpipe.maps.TXLensMaps method)
(txpipe.maps.TXMainMaps method)
(txpipe.maps.TXSourceMaps method)
(txpipe.noise_maps.TXExternalLensNoiseMaps method)
(txpipe.noise_maps.TXLensNoiseMaps method)
(txpipe.noise_maps.TXSourceNoiseMaps method)
(txpipe.source_selector.TXSourceSelectorMetacal method)
DataFile (class in txpipe.data_types.base)
dilated_healpix_map() (in module txpipe.utils.healpix)
Directory (class in txpipe.data_types.base)
E
extract_observables_plot_data() (in module txpipe.plotting.correlations)
F
FiducialCosmology (class in txpipe.data_types.types)
FileCollection (class in txpipe.data_types.base)
FileValidationError
fill_empty_sacc() (in module txpipe.utils.theory)
finalize_mappers() (txpipe.auxiliary_maps.TXAuxiliaryLensMaps method)
(txpipe.auxiliary_maps.TXAuxiliarySourceMaps method)
(txpipe.maps.TXBaseMaps method)
(txpipe.maps.TXLensMaps method)
(txpipe.maps.TXMainMaps method)
(txpipe.maps.TXSourceMaps method)
(txpipe.noise_maps.TXLensNoiseMaps method)
(txpipe.noise_maps.TXSourceNoiseMaps method)
find_module_versions() (in module txpipe.utils.provenance)
fit_straight_line() (in module txpipe.utils.fitting)
FitsFile (class in txpipe.data_types.base)
full_3x2pt_plots() (in module txpipe.plotting.correlations)
G
generate_provenance() (txpipe.data_types.base.DataFile static method)
get_caller_directory() (in module txpipe.utils.provenance)
get_metadata() (txpipe.photoz_stack.TXLensTrueNumberDensity method)
(txpipe.photoz_stack.TXPhotozLensStack method)
(txpipe.photoz_stack.TXPhotozSourceStack method)
(txpipe.photoz_stack.TXSourceTrueNumberDensity method)
get_n_of_z() (txpipe.data_types.types.NOfZFile method)
get_n_of_z_spline() (txpipe.data_types.types.NOfZFile method)
get_nbin() (txpipe.data_types.types.NOfZFile method)
get_patch_dir() (txpipe.twopoint.TXTwoPoint method)
get_primary_catalog_group() (txpipe.data_types.types.ShearCatalog method)
get_primary_catalog_names() (txpipe.data_types.types.ShearCatalog method)
get_size() (txpipe.data_types.types.ShearCatalog method)
git_current_revision() (in module txpipe.utils.provenance)
git_diff() (in module txpipe.utils.provenance)
H
h5py_shorten() (in module txpipe.utils.hdf_tools)
HDFFile (class in txpipe.data_types.base)
hex_escape() (in module txpipe.utils.misc)
HSCCalculator (class in txpipe.utils.calibration_tools)
HSCCalibrator (class in txpipe.utils.calibrators)
L
LensfitCalculator (class in txpipe.utils.calibration_tools)
LensfitCalibrator (class in txpipe.utils.calibrators)
LensingNoiseMaps (class in txpipe.data_types.types)
LensNumberDensityStats (class in txpipe.utils.number_density_stats)
list_maps() (txpipe.data_types.types.MapsFile method)
load() (txpipe.utils.calibrators.Calibrator class method)
(txpipe.utils.calibrators.HSCCalibrator class method)
(txpipe.utils.calibrators.LensfitCalibrator class method)
(txpipe.utils.calibrators.MetaCalibrator class method)
(txpipe.utils.calibrators.MetaDetectCalibrator class method)
(txpipe.utils.calibrators.NullCalibrator class method)
load_complete_file() (in module txpipe.utils.hdf_tools)
M
make_axis() (in module txpipe.plotting.correlations)
make_bias_parameters() (in module txpipe.utils.theory)
make_name() (txpipe.data_types.base.DataFile class method)
make_plot() (in module txpipe.plotting.correlations)
make_theory_plot_data() (in module txpipe.plotting.correlations)
manual_step_histogram() (in module txpipe.plotting.histogram)
MapsFile (class in txpipe.data_types.types)
memory_report() (txpipe.base_stage.PipelineStage method)
MetacalCalculator (class in txpipe.utils.calibration_tools)
metacalibration_names() (in module txpipe.data_types.types)
MetaCalibrator (class in txpipe.utils.calibrators)
MetaDetectCalibrator (class in txpipe.utils.calibrators)
missing_columns() (txpipe.data_types.base.FitsFile method)
module
txpipe.data_types.base
txpipe.data_types.types
txpipe.mapping
txpipe.plotting.correlations
txpipe.plotting.histogram
txpipe.randoms.randoms
txpipe.utils.calibration_tools
txpipe.utils.calibrators
txpipe.utils.fitting
txpipe.utils.hdf_tools
txpipe.utils.healpix
txpipe.utils.misc
txpipe.utils.mpi_utils
txpipe.utils.nmt_utils
txpipe.utils.number_density_stats
txpipe.utils.pixel_schemes
,
[1]
txpipe.utils.provenance
txpipe.utils.theory
txpipe.utils.timer
mpi_reduce_large() (in module txpipe.utils.mpi_utils)
MyNmtBin (class in txpipe.utils.nmt_utils)
MyNmtBinFlat (class in txpipe.utils.nmt_utils)
N
NOfZFile (class in txpipe.data_types.types)
NullCalibrator (class in txpipe.utils.calibrators)
number_of_realizations() (txpipe.data_types.types.ClusteringNoiseMaps method)
(txpipe.data_types.types.LensingNoiseMaps method)
O
open() (txpipe.data_types.base.DataFile class method)
(txpipe.data_types.base.Directory class method)
(txpipe.data_types.base.FitsFile class method)
(txpipe.data_types.base.HDFFile class method)
(txpipe.data_types.base.ParquetFile method)
(txpipe.data_types.base.PickleFile class method)
(txpipe.data_types.base.PNGFile class method)
(txpipe.data_types.types.SACCFile class method)
open_output() (txpipe.base_stage.PipelineStage method)
P
ParquetFile (class in txpipe.data_types.base)
path_for_file() (txpipe.data_types.base.FileCollection method)
PhotozPDFFile (class in txpipe.data_types.types)
PickleFile (class in txpipe.data_types.base)
PipelineStage (class in txpipe.base_stage)
plot() (txpipe.data_types.types.MapsFile method)
(txpipe.data_types.types.NOfZFile method)
(txpipe.jackknife.TXJackknifeCenters method)
plot_gnomonic() (txpipe.data_types.types.MapsFile method)
plot_healpix() (txpipe.data_types.types.MapsFile method)
PNGFile (class in txpipe.data_types.base)
prepare_mappers() (txpipe.auxiliary_maps.TXAuxiliaryLensMaps method)
(txpipe.auxiliary_maps.TXAuxiliarySourceMaps method)
(txpipe.maps.TXBaseMaps method)
(txpipe.maps.TXLensMaps method)
(txpipe.maps.TXMainMaps method)
(txpipe.maps.TXSourceMaps method)
(txpipe.noise_maps.TXLensNoiseMaps method)
(txpipe.noise_maps.TXSourceNoiseMaps method)
prepare_patches() (txpipe.twopoint.TXTwoPoint method)
Q
QPFile (class in txpipe.data_types.types)
R
random_points_in_quadrilateral() (in module txpipe.randoms.randoms)
random_points_in_triangle() (in module txpipe.randoms.randoms)
RandomsCatalog (class in txpipe.data_types.types)
read() (txpipe.data_types.base.PickleFile method)
(txpipe.data_types.base.YamlFile method)
read_catalog_info() (txpipe.data_types.types.ShearCatalog method)
read_density_split() (txpipe.data_types.types.ClusteringNoiseMaps method)
read_gnomonic() (txpipe.data_types.types.MapsFile method)
read_healpix() (txpipe.data_types.types.MapsFile method)
read_listing() (txpipe.data_types.base.FileCollection method)
read_map() (txpipe.data_types.types.MapsFile method)
read_map_info() (txpipe.data_types.types.MapsFile method)
read_mask() (txpipe.data_types.types.MapsFile method)
read_nbin() (txpipe.data_types.types.TomographyCatalog method)
(txpipe.twopoint.TXTwoPoint method)
(txpipe.twopoint_null_tests.TXGammaTFieldCenters method)
(txpipe.twopoint_null_tests.TXGammaTRandoms method)
(txpipe.twopoint_null_tests.TXGammaTStars method)
read_provenance() (txpipe.data_types.base.DataFile method)
(txpipe.data_types.base.Directory method)
(txpipe.data_types.base.FitsFile method)
(txpipe.data_types.base.HDFFile method)
(txpipe.data_types.base.PickleFile method)
(txpipe.data_types.base.PNGFile method)
(txpipe.data_types.base.YamlFile method)
(txpipe.data_types.types.SACCFile method)
read_rotation() (txpipe.data_types.types.LensingNoiseMaps method)
read_shear_catalog_type() (in module txpipe.utils.calibration_tools)
read_zbins() (txpipe.data_types.types.TomographyCatalog method)
rename_iterated() (in module txpipe.utils.misc)
repack() (in module txpipe.utils.hdf_tools)
required_columns (txpipe.data_types.base.FitsFile attribute)
required_datasets (txpipe.data_types.base.HDFFile attribute)
(txpipe.data_types.types.LensingNoiseMaps attribute)
(txpipe.data_types.types.MapsFile attribute)
(txpipe.data_types.types.NOfZFile attribute)
(txpipe.data_types.types.PhotozPDFFile attribute)
(txpipe.data_types.types.RandomsCatalog attribute)
(txpipe.data_types.types.TomographyCatalog attribute)
round_approx() (in module txpipe.utils.pixel_schemes)
,
[1]
run() (txpipe.blinding.TXBlinding method)
(txpipe.blinding.TXNullBlinding method)
(txpipe.extensions.twopoint_scia.TXSelfCalibrationIA method)
(txpipe.lens_selector.TXBaseLensSelector method)
(txpipe.photoz_stack.TXPhotozLensStack method)
(txpipe.photoz_stack.TXPhotozSourceStack method)
(txpipe.twopoint.TXTwoPoint method)
(txpipe.twopoint_null_tests.TXGammaTFieldCenters method)
(txpipe.twopoint_null_tests.TXGammaTRandoms method)
(txpipe.twopoint_null_tests.TXGammaTStars method)
S
SACCFile (class in txpipe.data_types.types)
save_file() (txpipe.data_types.types.CSVFile method)
save_maps() (txpipe.maps.TXBaseMaps method)
save_plot() (txpipe.data_types.types.NOfZFile method)
select() (txpipe.source_selector.TXSourceSelectorBase method)
select_2d() (txpipe.source_selector.TXSourceSelectorHSC method)
select_lens_boss() (txpipe.lens_selector.TXBaseLensSelector method)
setup_output() (txpipe.lens_selector.TXBaseLensSelector method)
(txpipe.source_selector.TXSourceSelectorBase method)
(txpipe.source_selector.TXSourceSelectorHSC method)
(txpipe.source_selector.TXSourceSelectorLensfit method)
(txpipe.source_selector.TXSourceSelectorMetacal method)
(txpipe.source_selector.TXSourceSelectorMetadetect method)
ShearCatalog (class in txpipe.data_types.types)
smooth_nz() (in module txpipe.plotting.correlations)
(in module txpipe.utils.theory)
smooth_sacc_nz() (in module txpipe.utils.theory)
SourceNumberDensityStats (class in txpipe.utils.number_density_stats)
subsample_randoms() (txpipe.random_cats.TXRandomCat method)
suffix (txpipe.data_types.base.DataFile attribute)
(txpipe.data_types.base.Directory attribute)
(txpipe.data_types.base.FileCollection attribute)
(txpipe.data_types.base.FitsFile attribute)
(txpipe.data_types.base.HDFFile attribute)
(txpipe.data_types.base.PickleFile attribute)
(txpipe.data_types.base.PNGFile attribute)
(txpipe.data_types.base.TextFile attribute)
(txpipe.data_types.base.YamlFile attribute)
(txpipe.data_types.types.CSVFile attribute)
(txpipe.data_types.types.QPFile attribute)
(txpipe.data_types.types.SACCFile attribute)
suffiz (txpipe.data_types.base.ParquetFile attribute)
supports_parallel_write (txpipe.data_types.base.DataFile attribute)
(txpipe.data_types.base.HDFFile attribute)
T
TextFile (class in txpipe.data_types.base)
theory_3x2pt() (in module txpipe.utils.theory)
to_ccl() (txpipe.data_types.types.FiducialCosmology method)
TomographyCatalog (class in txpipe.data_types.types)
TXApertureMass (class in txpipe.twopoint_null_tests)
TXAuxiliaryLensMaps (class in txpipe.auxiliary_maps)
TXAuxiliarySourceMaps (class in txpipe.auxiliary_maps)
TXBaseLensSelector (class in txpipe.lens_selector)
TXBaseMaps (class in txpipe.maps)
TXBlinding (class in txpipe.blinding)
TXBrighterFatterPlot (class in txpipe.psf_diagnostics)
TXConvergenceMapPlots (class in txpipe.convergence)
TXConvergenceMaps (class in txpipe.convergence)
TXDensityMaps (class in txpipe.maps)
TXExposureInfo (class in txpipe.exposure_info)
TXExternalLensCatalogSplitter (class in txpipe.lens_selector)
TXExternalLensMaps (class in txpipe.maps)
TXExternalLensNoiseMaps (class in txpipe.noise_maps)
TXFourierGaussianCovariance (class in txpipe.covariance)
TXFourierNamasterCovariance (class in txpipe.covariance_nmt)
TXFourierTJPCovariance (class in txpipe.covariance)
TXGammaTFieldCenters (class in txpipe.twopoint_null_tests)
TXGammaTRandoms (class in txpipe.twopoint_null_tests)
TXGammaTStars (class in txpipe.twopoint_null_tests)
TXJackknifeCenters (class in txpipe.jackknife)
TXLensCatalogSplitter (class in txpipe.lens_selector)
TXLensDiagnosticPlots (class in txpipe.diagnostics)
TXLensMaps (class in txpipe.maps)
TXLensNoiseMaps (class in txpipe.noise_maps)
TXLensTrueNumberDensity (class in txpipe.photoz_stack)
TXMainMaps (class in txpipe.maps)
TXMapCorrelations (class in txpipe.map_correlations)
TXMapPlots (class in txpipe.map_plots)
TXMeanLensSelector (class in txpipe.lens_selector)
TXModeLensSelector (class in txpipe.lens_selector)
TXNoiseMapsJax (class in txpipe.noise_maps)
TXNullBlinding (class in txpipe.blinding)
TXPhotozLensStack (class in txpipe.photoz_stack)
TXPhotozPlots (class in txpipe.photoz_stack)
TXPhotozSourceStack (class in txpipe.photoz_stack)
txpipe.data_types.base
module
txpipe.data_types.types
module
txpipe.mapping
module
txpipe.plotting.correlations
module
txpipe.plotting.histogram
module
txpipe.randoms.randoms
module
txpipe.utils.calibration_tools
module
txpipe.utils.calibrators
module
txpipe.utils.fitting
module
txpipe.utils.hdf_tools
module
txpipe.utils.healpix
module
txpipe.utils.misc
module
txpipe.utils.mpi_utils
module
txpipe.utils.nmt_utils
module
txpipe.utils.number_density_stats
module
txpipe.utils.pixel_schemes
module
,
[1]
txpipe.utils.provenance
module
txpipe.utils.theory
module
txpipe.utils.timer
module
TXPSFDiagnostics (class in txpipe.psf_diagnostics)
TXRandomCat (class in txpipe.random_cats)
TXRealGaussianCovariance (class in txpipe.covariance)
TXRealNamasterCovariance (class in txpipe.covariance_nmt)
TXRoweStatistics (class in txpipe.psf_diagnostics)
TXSelfCalibrationIA (class in txpipe.extensions.twopoint_scia)
TXShearCalibration (class in txpipe.calibrate)
TXSimpleMask (class in txpipe.masks)
TXSourceDiagnosticPlots (class in txpipe.diagnostics)
TXSourceMaps (class in txpipe.maps)
TXSourceNoiseMaps (class in txpipe.noise_maps)
TXSourceSelectorBase (class in txpipe.source_selector)
TXSourceSelectorHSC (class in txpipe.source_selector)
TXSourceSelectorLensfit (class in txpipe.source_selector)
TXSourceSelectorMetacal (class in txpipe.source_selector)
TXSourceSelectorMetadetect (class in txpipe.source_selector)
TXSourceTrueNumberDensity (class in txpipe.photoz_stack)
TXStarCatalogSplitter (class in txpipe.twopoint_null_tests)
TXTracerMetadata (class in txpipe.metadata)
TXTruthLensSelector (class in txpipe.lens_selector)
TXTwoPoint (class in txpipe.twopoint)
TXTwoPointFourier (class in txpipe.twopoint_fourier)
TXTwoPointPlots (class in txpipe.twopoint_plots)
TXTwoPointPlotsFourier (class in txpipe.twopoint_plots)
TXTwoPointTheoryFourier (class in txpipe.theory)
TXTwoPointTheoryReal (class in txpipe.theory)
TXUniformDepthMap (class in txpipe.auxiliary_maps)
U
unique_list() (in module txpipe.utils.misc)
V
validate() (txpipe.data_types.base.DataFile method)
(txpipe.data_types.base.FitsFile method)
(txpipe.data_types.base.HDFFile method)
W
write() (txpipe.data_types.base.PickleFile method)
(txpipe.data_types.base.YamlFile method)
write_global_values() (txpipe.lens_selector.TXBaseLensSelector method)
(txpipe.source_selector.TXSourceSelectorBase method)
write_listing() (txpipe.data_types.base.FileCollection method)
write_map() (txpipe.data_types.types.MapsFile method)
write_provenance() (txpipe.data_types.base.DataFile method)
(txpipe.data_types.base.Directory method)
(txpipe.data_types.base.FitsFile method)
(txpipe.data_types.base.HDFFile method)
(txpipe.data_types.base.PickleFile method)
(txpipe.data_types.base.PNGFile method)
(txpipe.data_types.base.YamlFile method)
write_tomography() (txpipe.lens_selector.TXBaseLensSelector method)
(txpipe.source_selector.TXSourceSelectorBase method)
(txpipe.source_selector.TXSourceSelectorHSC method)
(txpipe.source_selector.TXSourceSelectorMetacal method)
Y
YamlFile (class in txpipe.data_types.base)
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