TXPipe
Getting started:
TXPipe Installation
Running an example pipeline
Concept Overview
File Types
TXPipe File Tags
Shear calibration guide
Using & Contributing:
Configuration Files
Data Sources
Adding new pipeline stages
TXPipe Parallelization
Running TXPipe at NERSC
Stages requiring the LSST environment
Reference:
Reading HDF5 Files
TXPipe Stage Listing
Data Type Classes
Library Utilities
TXPipe
Index
Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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W
A
add_data() (txpipe.utils.number_density_stats.LensNumberDensityStats method)
apply_galaxy_bias_ggl() (in module txpipe.plotting.correlations)
axis_setup() (in module txpipe.plotting.correlations)
B
BatchWriter (class in txpipe.utils.hdf_tools)
BinnedCatalog (class in txpipe.data_types)
C
calc_chi2() (in module txpipe.utils.fitting)
catalog_type (txpipe.data_types.ShearCatalog property)
choose_ell_bins() (in module txpipe.utils.nmt_utils)
choose_pixelization() (in module txpipe.utils.pixel_schemes)
close() (txpipe.data_types.SACCFile method)
ClusteringNoiseMaps (class in txpipe.data_types)
collect() (txpipe.utils.number_density_stats.LensNumberDensityStats method)
combined_iterators() (txpipe.base_stage.PipelineStage method)
config (txpipe.base_stage.PipelineStage attribute)
create_dataset_early_allocated() (in module txpipe.utils.hdf_tools)
CSVFile (class in txpipe.data_types)
D
data_ranges_by_rank() (txpipe.base_stage.PipelineStage method)
describe_configuration() (txpipe.base_stage.PipelineStage class method)
dilated_healpix_map() (in module txpipe.utils.healpix)
E
extract_observables_plot_data() (in module txpipe.plotting.correlations)
F
FiducialCosmology (class in txpipe.data_types)
fill_empty_sacc() (in module txpipe.utils.theory)
find_module_versions() (in module txpipe.utils.provenance)
fit_straight_line() (in module txpipe.utils.fitting)
full_3x2pt_plots() (in module txpipe.plotting.correlations)
G
get_2d_n_of_z() (txpipe.data_types.QPNOfZFile method)
get_bands() (txpipe.data_types.PhotometryCatalog method)
(txpipe.data_types.ShearCatalog method)
get_bin_n_of_z() (txpipe.data_types.QPNOfZFile method)
get_bins() (txpipe.data_types.BinnedCatalog method)
get_caller_directory() (in module txpipe.utils.provenance)
get_config_dict() (txpipe.base_stage.PipelineStage method)
get_input() (txpipe.base_stage.PipelineStage method)
get_input_type() (txpipe.base_stage.PipelineStage method)
get_module() (txpipe.base_stage.PipelineStage class method)
get_names() (txpipe.data_types.QPMultiFile method)
get_nbin() (txpipe.data_types.QPNOfZFile method)
get_output() (txpipe.base_stage.PipelineStage method)
get_output_type() (txpipe.base_stage.PipelineStage method)
get_pdf_type() (txpipe.data_types.QPPDFFile method)
get_primary_catalog_group() (txpipe.data_types.ShearCatalog method)
get_primary_catalog_names() (txpipe.data_types.ShearCatalog method)
get_qp_pdf_type() (txpipe.data_types.QPNOfZFile method)
get_size() (txpipe.data_types.ShearCatalog method)
get_stage() (txpipe.base_stage.PipelineStage class method)
get_true_redshift_column() (txpipe.data_types.ShearCatalog method)
get_z() (txpipe.data_types.QPNOfZFile method)
(txpipe.data_types.QPPDFFile method)
get_z_grid() (txpipe.data_types.PhotozPDFFile method)
git_current_revision() (in module txpipe.utils.provenance)
git_diff() (in module txpipe.utils.provenance)
H
h5py_shorten() (in module txpipe.utils.hdf_tools)
hex_escape() (in module txpipe.utils.misc)
I
input_tags() (txpipe.base_stage.PipelineStage class method)
is_dask() (txpipe.base_stage.PipelineStage method)
is_mpi() (txpipe.base_stage.PipelineStage method)
iterate() (txpipe.data_types.QPPDFFile method)
iterate_fits() (txpipe.base_stage.PipelineStage method)
iterate_hdf() (txpipe.base_stage.PipelineStage method)
L
LensingNoiseMaps (class in txpipe.data_types)
LensNumberDensityStats (class in txpipe.utils.number_density_stats)
list_maps() (txpipe.data_types.MapsFile method)
load_complete_file() (in module txpipe.utils.hdf_tools)
M
make_axis() (in module txpipe.plotting.correlations)
make_bias_parameters() (in module txpipe.utils.theory)
make_plot() (in module txpipe.plotting.correlations)
make_theory_plot_data() (in module txpipe.plotting.correlations)
manual_step_histogram() (in module txpipe.plotting.histogram)
map_tasks_by_rank() (txpipe.base_stage.PipelineStage method)
MapsFile (class in txpipe.data_types)
memory_report() (txpipe.base_stage.PipelineStage method)
metacalibration_names() (in module txpipe.data_types)
metadata (txpipe.data_types.QPBaseFile property)
module
txpipe.data_types
txpipe.mapping
txpipe.plotting.correlations
txpipe.plotting.histogram
txpipe.randoms.randoms
txpipe.utils.fitting
txpipe.utils.hdf_tools
txpipe.utils.healpix
txpipe.utils.misc
txpipe.utils.mpi_utils
txpipe.utils.nmt_utils
txpipe.utils.number_density_stats
txpipe.utils.pixel_schemes
txpipe.utils.provenance
txpipe.utils.theory
txpipe.utils.timer
mpi_reduce_large() (in module txpipe.utils.mpi_utils)
N
number_of_realizations() (txpipe.data_types.ClusteringNoiseMaps method)
(txpipe.data_types.LensingNoiseMaps method)
O
open() (txpipe.data_types.SACCFile class method)
open_input() (txpipe.base_stage.PipelineStage method)
open_output() (txpipe.base_stage.PipelineStage method)
output_tags() (txpipe.base_stage.PipelineStage class method)
P
PhotometryCatalog (class in txpipe.data_types)
PhotozPDFFile (class in txpipe.data_types)
PipelineStage (class in txpipe.base_stage)
plot() (txpipe.data_types.MapsFile method)
plot_gnomonic() (txpipe.data_types.MapsFile method)
plot_healpix() (txpipe.data_types.MapsFile method)
PZRailSummarize (class in txpipe.rail.summarize)
PZRealizationsPlot (class in txpipe.rail.summarize)
Q
QPBaseFile (class in txpipe.data_types)
QPMultiFile (class in txpipe.data_types)
QPNOfZFile (class in txpipe.data_types)
QPPDFFile (class in txpipe.data_types)
R
random_points_in_quadrilateral() (in module txpipe.randoms.randoms)
random_points_in_triangle() (in module txpipe.randoms.randoms)
RandomsCatalog (class in txpipe.data_types)
read_catalog_info() (txpipe.data_types.ShearCatalog method)
read_density_split() (txpipe.data_types.ClusteringNoiseMaps method)
read_density_split_healpix() (txpipe.data_types.ClusteringNoiseMaps method)
read_ensemble() (txpipe.data_types.QPMultiFile method)
(txpipe.data_types.QPNOfZFile method)
read_gnomonic() (txpipe.data_types.MapsFile method)
read_map() (txpipe.data_types.MapsFile method)
read_map_healpix() (txpipe.data_types.MapsFile method)
read_map_info() (txpipe.data_types.MapsFile method)
read_mask() (txpipe.data_types.MapsFile method)
read_mask_healpix() (txpipe.data_types.MapsFile method)
read_metadata() (txpipe.data_types.QPMultiFile method)
read_nbin() (txpipe.data_types.TomographyCatalog method)
read_provenance() (txpipe.data_types.SACCFile method)
read_rotation() (txpipe.data_types.LensingNoiseMaps method)
read_rotation_healpix() (txpipe.data_types.LensingNoiseMaps method)
read_shear_catalog_type() (in module txpipe.utils.misc)
read_zbins() (txpipe.data_types.TomographyCatalog method)
rename_iterated() (in module txpipe.utils.misc)
repack() (in module txpipe.utils.hdf_tools)
required_datasets (txpipe.data_types.BinnedCatalog attribute)
(txpipe.data_types.LensingNoiseMaps attribute)
(txpipe.data_types.MapsFile attribute)
(txpipe.data_types.PhotozPDFFile attribute)
(txpipe.data_types.RandomsCatalog attribute)
(txpipe.data_types.TomographyCatalog attribute)
round_approx() (in module txpipe.utils.pixel_schemes)
run() (txpipe.base_stage.PipelineStage method)
S
SACCFile (class in txpipe.data_types)
save_file() (txpipe.data_types.CSVFile method)
ShearCatalog (class in txpipe.data_types)
smooth_nz() (in module txpipe.plotting.correlations)
(in module txpipe.utils.theory)
smooth_sacc_nz() (in module txpipe.utils.theory)
split_tasks_by_rank() (txpipe.base_stage.PipelineStage method)
suffix (txpipe.data_types.CSVFile attribute)
(txpipe.data_types.SACCFile attribute)
T
theory_3x2pt() (in module txpipe.utils.theory)
time_stamp() (txpipe.base_stage.PipelineStage method)
to_ccl() (txpipe.data_types.FiducialCosmology method)
TomographyCatalog (class in txpipe.data_types)
TXApertureMass (class in txpipe.twopoint_null_tests)
TXAuxiliaryLensMaps (class in txpipe.auxiliary_maps)
TXAuxiliarySourceMaps (class in txpipe.auxiliary_maps)
TXAuxiliarySSIMaps (class in txpipe.auxiliary_maps)
TXBaseLensSelector (class in txpipe.lens_selector)
TXBaseMaps (class in txpipe.maps)
TXBlinding (class in txpipe.blinding)
TXBrighterFatterPlot (class in txpipe.psf_diagnostics)
TXBuzzardMock (class in txpipe.ingest.mocks)
TXConvergenceMapPlots (class in txpipe.convergence)
TXConvergenceMaps (class in txpipe.convergence)
TXCosmoDC2Mock (class in txpipe.ingest.mocks)
TXDensityMaps (class in txpipe.maps)
TXDiagnosticQuantiles (class in txpipe.diagnostics)
TXExposureInfo (class in txpipe.exposure_info)
TXExternalLensCatalogSplitter (class in txpipe.lens_selector)
TXExternalLensMaps (class in txpipe.maps)
TXExternalLensNoiseMaps (class in txpipe.noise_maps)
TXFocalPlanePlot (class in txpipe.spatial_diagnostics)
TXFourierGaussianCovariance (class in txpipe.covariance)
TXFourierNamasterCovariance (class in txpipe.covariance_nmt)
TXFourierTJPCovariance (class in txpipe.covariance)
TXGalaxyStarDensity (class in txpipe.psf_diagnostics)
TXGalaxyStarShear (class in txpipe.psf_diagnostics)
TXGammaTFieldCenters (class in txpipe.twopoint_null_tests)
TXGammaTRandoms (class in txpipe.twopoint_null_tests)
TXGammaTStars (class in txpipe.twopoint_null_tests)
TXGaussianSimsMock (class in txpipe.ingest.mocks)
TXIngestDataPreview02 (class in txpipe.ingest.dp02)
TXIngestRedmagic (class in txpipe.ingest.redmagic)
TXIngestSSIDESBalrog (class in txpipe.ingest.ssi)
TXIngestSSIDetectionDESBalrog (class in txpipe.ingest.ssi)
TXIngestSSIGCR (class in txpipe.ingest.ssi)
TXIngestSSIMatchedDESBalrog (class in txpipe.ingest.ssi)
TXIngestStars (class in txpipe.ingest.gcr)
TXJackknifeCenters (class in txpipe.jackknife)
TXJackknifeCentersSource (class in txpipe.jackknife)
TXLensCatalogSplitter (class in txpipe.lens_selector)
TXLensDiagnosticPlots (class in txpipe.diagnostics)
TXLensMaps (class in txpipe.maps)
TXLensNoiseMaps (class in txpipe.noise_maps)
TXLogNormalGlass (class in txpipe.simulation)
TXLSSWeights (class in txpipe.lssweights)
TXLSSWeightsLinBinned (class in txpipe.lssweights)
TXLSSWeightsLinPix (class in txpipe.lssweights)
TXLSSWeightsUnit (class in txpipe.lssweights)
TXMapCorrelations (class in txpipe.map_correlations)
TXMapPlots (class in txpipe.map_plots)
TXMapPlotsSSI (class in txpipe.map_plots)
TXMatchSSI (class in txpipe.ingest.ssi)
TXMeanLensSelector (class in txpipe.lens_selector)
TXMetacalGCRInput (class in txpipe.ingest.gcr)
TXMockTruthPZ (class in txpipe.ingest.mocks)
TXModeLensSelector (class in txpipe.lens_selector)
TXNoiseMapsJax (class in txpipe.noise_maps)
TXNullBlinding (class in txpipe.blinding)
TXParqetToHDF (class in txpipe.rail.conversions)
TXPhotozPlot (class in txpipe.photoz_stack)
TXPhotozStack (class in txpipe.photoz_stack)
txpipe.data_types
module
txpipe.mapping
module
txpipe.plotting.correlations
module
txpipe.plotting.histogram
module
txpipe.randoms.randoms
module
txpipe.utils.fitting
module
txpipe.utils.hdf_tools
module
txpipe.utils.healpix
module
txpipe.utils.misc
module
txpipe.utils.mpi_utils
module
txpipe.utils.nmt_utils
module
txpipe.utils.number_density_stats
module
txpipe.utils.pixel_schemes
module
txpipe.utils.provenance
module
txpipe.utils.theory
module
txpipe.utils.timer
module
TXPSFDiagnostics (class in txpipe.psf_diagnostics)
TXPSFMomentCorr (class in txpipe.psf_diagnostics)
TXRandomCat (class in txpipe.random_cats)
TXRandomForestLensSelector (class in txpipe.lens_selector)
TXRealGaussianCovariance (class in txpipe.covariance)
TXRealNamasterCovariance (class in txpipe.covariance_nmt)
TXRoweStatistics (class in txpipe.psf_diagnostics)
TXShearCalibration (class in txpipe.calibrate)
TXSimpleMask (class in txpipe.masks)
TXSimpleMaskFrac (class in txpipe.masks)
TXSimpleMaskSource (class in txpipe.masks)
TXSimpleMock (class in txpipe.ingest.mocks)
TXSourceDiagnosticPlots (class in txpipe.diagnostics)
TXSourceMaps (class in txpipe.maps)
TXSourceNoiseMaps (class in txpipe.noise_maps)
TXSSIMagnification (class in txpipe.magnification)
TXStarCatalogSplitter (class in txpipe.twopoint_null_tests)
TXSubsampleRandoms (class in txpipe.random_cats)
TXTauStatistics (class in txpipe.psf_diagnostics)
TXTracerMetadata (class in txpipe.metadata)
TXTruePhotozStack (class in txpipe.photoz_stack)
TXTruthLensCatalogSplitter (class in txpipe.lens_selector)
TXTruthLensCatalogSplitterWeighted (class in txpipe.lens_selector)
TXTruthLensSelector (class in txpipe.lens_selector)
TXTwoPoint (class in txpipe.twopoint)
TXTwoPointFourier (class in txpipe.twopoint_fourier)
TXTwoPointPixel (class in txpipe.twopoint)
TXTwoPointPixelExtCross (class in txpipe.twopoint)
TXTwoPointPlots (class in txpipe.twopoint_plots)
TXTwoPointPlotsFourier (class in txpipe.twopoint_plots)
TXTwoPointPlotsTheory (class in txpipe.twopoint_plots)
TXTwoPointTheoryFourier (class in txpipe.theory)
TXTwoPointTheoryReal (class in txpipe.theory)
TXUniformDepthMap (class in txpipe.auxiliary_maps)
U
unique_list() (in module txpipe.utils.misc)
W
write_ensemble() (txpipe.data_types.QPMultiFile method)
(txpipe.data_types.QPNOfZFile method)
write_map() (txpipe.data_types.MapsFile method)
write_map_pixval() (txpipe.data_types.MapsFile method)
write_nbin() (txpipe.data_types.TomographyCatalog method)
write_zbins() (txpipe.data_types.TomographyCatalog method)